Fuchs S., Kucklick M., Lehmann E., Beckmann A., Wilkens M., Kolte B., Mustafayeva A., Ludwig T., Diwo M., Wissing J., Jänsch L., Ahrens C., Ignatova Z., Engelmann S.
Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach.
PLOS Genetics, 17, (6), 2021, 1-26.
Petruschke H., Schori C., Canzler S., Riesbeck S., Poehlein A., Daniel R., Frei D., Segessemann T., Zimmermann J., Marinos G., Kaleta C., Jehmlich N., Ahrens C., von Bergen M.
Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome.
Microbiome, 9, 2021, 1-19.
Mayerhofer J., Thürig B., Enderle E., Lutz S., Fuchs J., Ahrens C., Widmer F., Oberhänsli T.
Welche Bakterien machen Komposte suppressiv?
In: Nationale Bioforschungstagung 2020. 04.12., Virtuell (online Konferenz des Nationalen Bioforschungsforum). 2020.
Varadarajan A.R., Allan R.N., Valentin J.D.P., Castaneda Ocampo O.E., Somerville V., Pietsch F., Buhmann M.T., West J., Skipp P.J., van der Mei H.C., Ren Q., Schreiber F., Webb J.S., Ahrens C.
An integrated model system to gain mechanistic insights into biofilm-associated antimicrobial resistance in Pseudomonas aeruginosa MPAO1.
NPJ Biofilms and Microbiomes, 6, (46), 2020, 1-17.
Bartel J., Varadarajan A.R., Sura T., Ahrens C., Maass S., Becher D.
Optimized proteomics workflow for the detection of small proteins.
Journal of Proteome Research, 19, 2020, 4404-4018.
Koutsovoulos G.D., Poullet M., Elashry A., Kozlowski D.K.L., Sallet E., Da Rocha M., Perfus-Barbeoch L., Martin-Jimenez C., Frey J. E., Ahrens C., Kiewnick S., Danchin E.G.J.
Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode.
Scientific Data, 7, (1), 2020, 324-337.
Reva O.N., Larisa S.A., Mwakili A.D., Tibuhwa, D., Lyantagaye S., Chan. W.Y., Lutz S., Ahrens C., Vater J., Borriss R.
Complete genome sequence and epigenetic profile of Bacillus velezensis UCMB5140 used for plant and crop protection in comparison with other plant-associated Bacillus strains.
Applied Microbiology and Biotechnology, 104, (17), 2020, 7643-7656.
Melior H., Maass S., Li S., Förstner K.U., Azarderakhsh S., Varadarajan A.R., Stötzel M., Elhossary M., Barth-Weber S., Ahrens C., Becher D., Evguenieva-Hackenberg E.
The leader peptide peTrpL forms antibiotic-containing ribonucleoprotein complexes for posttranscriptional regulation of multiresistance genes.
mBio, 11, (3), 2020, 1-22.
De Vrieze M., Varadarajan A. R., Schneeberger K., Bailly A., Rohr R. P., Ahrens C., Weisskopf L.
Linking comparative genomics of nine potato-associated pseudomonas isolates with their differing biocontrol potential against late blight.
Frontiers in Microbiology, 11, (30. April), 2020, 1-20.
Varadarajan A. R., Goetze S., Pavlou M. P., Grosboillot V., Shen Y., Loessner M. J., Ahrens C., Wollscheid B.
A Proteogenomic Resource Enabling Integrated Analysis of Listeria Genotype-Proteotype-Phenotype Relationships.
Journal of Proteome Research, 19, (4), 2020, 1647-1662.
Reva O.N., Swanevelder D.Z.H., Mwita L.A., Mwakili A.D., Muzondiwa D., Joubert M., Chan W.Y., Lutz S., Ahrens C., Avdeeva L.V., Kharkota M.A., Tibuhwa D., Lyantagaye S., Vater J., Borriss R. und weitere
Genetic, epigenetic and phenotypic diversity of four bacillus velezensis strains used for plant protection or as probiotics.
Frontiers in Microbiology, 10, (2619), 2019, 1-25.
Valentin J., Ravikumar Varadarajan A., Ahrens C., van der Mei H., Ren Q.
Identification of genes involved in Pseudomonas aeruginosa biofilm resistance to antibiotics.
In: eCM Konferenz Orthopedic Infection. 26.06., Davos. 2019.
Somerville V., Lutz S., Schmid M., Frei D., Moser A., Irmler S., Frey J. E., Ahrens C.
Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
BMC Microbiology, 19, (1), 2019, 1-18.
Fernández N., Cabrera J. J., Varadarajan A. R, Lutz S., Ledermann R., Roschitzki B., Eberl L., Bedmar E. J., Fischer H.-M., Pessi G., Ahrens C. H., Mesa S.
An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens.
Frontiers in Microbiology, 10, (May), 2019, 1-22.
Gore-Lloyd D., Sumann I., Brachmann A. O., Schneeberger K., Ortiz-Merino R. A., Schläfli M., Kirner P., Santos Kron A., Rueda Mejia M. P., Somerville V., Wolfe K. H., Piel J., Ahrens C., Henk D., Freimoser F.
Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima.
Molecular Microbiology, 112, (1), 2019, 317-332.
Ahrens C., Frey J. E., Irmler S., Kölliker R., Pelludat C., Weisskopf L., Widmer F.
Schlussbericht Agroscope Forschungsprogramm Mikrobielle BioDiversität.
Hrsg. Agroscope, Bern. Januar, 2018, 50 S.
Schmid M., Frei D., Patrignani A., Schlapbach R., Frey J. E., Remus-Emsermann M.N.P., Ahrens C.
Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.
Nucleic Acids Research, 46, (17), 2018, 8953-8965.
Ahrens C., Frey J. E., Irmler S., Kölliker R., Pelludat C., Weisskopf L., Widmer F.
Agroscope Research Program Microbial BioDiversity: Final Meeting.
Agroscope Science, 65, 2018, 1-20.
Lardi M., Liu Y., Giudice A., Ahrens C., Zamboni N., Pessi G.
Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris.
International Journal of Molecular Sciences, 19, (4), 2018, E1049.
Huntscha S., Stravs M.A., Bühlmann A., Ahrens C., Frey J. E., Pomati F., Hollender J., Bürge I., Balmer M., Poiger T.
Seasonal dynamics of glyphosate and AMPA in lake Greifensee: Rapid microbial degradation in the epilimnion during summer.
Environmental Science & Technology, 52, (8), 2018, 4641-4649.
