Equine breeding is often based on conformation traits, describing the proportions, shape and joint angles of a horse. These conformations traits are, however, mostly subjectively judged and not measured objectively, affecting the response of selection through lower heritabilities and precision. In this study, we measured joint angles, quantified the variation in shape of 608 Swiss Franches-Montagnes (FM) horses and estimated the heritability of these traits. We found that the poll angle had the highest heritability of all joint angles (h2 = 0.37), and variation in shape describing the type (heavy–light) was also fairly heritable (h2 = 0.36–0.37). Furthermore, the shape of the FM stallions has clearly evolved towards a lighter type from 1940 to 2018 without stabilisation in recent years, risking the loss of the light draught horse type. Phenotyping based on photographs allowed us to improve the accuracy of certain joint angle traits, and to monitor the conformational development of the FM breed.