Numéro du projet: 22.05.16.03.02

Novel Insights in Pest-Plant Interactions

Développement de connaissances fondamentales au profit de la recherche d'Agroscope et l'établissement de solutions pour la pratique. Ces connaissances ne sont pas disponibles via un autre moyen et prioritaires pour Agroscope. Ces briques seront alors exploitables pour le développement de solutions dans le contexte de nouveaux projets.

Ce projet regroupe au sein du portfolio du CRS 5 « Protection des plantes » toutes les activités de recherche plus fondamentales ou en phase très précoce d’évolution. Seul un bon équilibre (ressources engagées, champs d’applications etc) entre les projets de différents niveaux de maturité scientifique et technique est garant de la contribution durable, constante et sur le long terme de nouvelles connaissances et d’innovations par la recherche à la pratique.

Nom, Prénom Site
Blouin Arnaud Changins
Brabant Cécile Changins
Bussereau Floriane Changins
Dahlin Paul Wädenswil
Freimoser Florian Changins
Gaume Alain Changins
Gindro Katia Changins
Hilber Maja Wädenswil
Hiltpold Ivan Changins
Kehrli Patrik Changins
Kellenberger Isabelle Changins
Laurent Julie Changins
Mazzi Dominique Cadenazzo
Ruthes Andrea Caroline Wädenswil
Schumpp Olivier Changins
Steinger Thomas Changins

Debonneville C., Schumpp O.
La génomique est le nouveau fer de lance de la protection des plantes.
Journal Agri, 31 mai, 2024, 21.

Romero Lozano I., Hévin S., Kehrli P.
New insights into sour rot: A complex interaction between the microbial community, vinegar flies and weather.
IOBC-WPRS Bulletin, 171, 2024, 67-74.

Frick C., Kellerhals M., Cia S., Debonneville C., Passerat M.
Premières expériences avec des porte-greffes tolérants aux maladies du dépérissement du poirier et de la prolifération du pommier.
Vignes et Vergers, 3, 2024, 12-15.
autres langues: allemand

Fragnière A.-L., Bacher S., Kehrli P.
Identifying candidate host plants for trap cropping against Drosophila suzukii in vineyards.
Journal of Pest Science, In Press, 2024, 1-17.

Cadena Canals J., Debonneville C., Jeanrenaud M., Viret O., Schumpp O.
Flavescence dorée phytoplasma in northern Swiss vineyards is anthropogenic.
Dans: Proceedings of the 20th congress of the International Council for the Study of Virus and Virus-Like Diseases of the Grapevine (ICVG). 25-29 September, Ed. ICVG, Thessaloniki. 2023, 96-97.

Debonneville C., Cadena Canals J., Linder C., Schumpp O.
Das Auftreten von Flavescence dorée Phytoplasmen in den Schweizer Rebbergen nördlich der Alpen ist anthropogen bedingt.
Dans: Regionale Rebbautagung. 8. Dezember, Ed. Agroscope, Wädenswil. 2023.

Kuhn J., Abe J., Adkins S., Alkhovsky S., Avšič-Županc T., Ayllón MA., Bahl J., Balkema B. A., Ballinger M., Baranwal V., Beer M., Bejerman N., Bergeron E., Biedenkopf N., Blair C. et autres
Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota).
Journal of General Virology, 104, (8), 2023, 1-55.

Rivarez M. P. S., Faure C., Svanella-Dumas L., Pecman A., Žnidaric M. T., Schönegger D., De Jonghe K., Blouin A., Rasmussen D., Massart S., Ravnikar M., Kutnjak D., Marais A., Candresse T.
Diversity and pathobiology of anilarvirus unexpectedly detected in diverse plants and global sequencing data.
Phytopathology, In Press, 2023, 1-44.

Blouin A., Dubuis N., Brodard J., Apothéloz L., Altenbach D., Schumpp O.
Symptomatic, widespread, and inconspicuous: new detection of tomato fruit blotch virus.
Phytopathologia Mediterranea, 62, (3), 2023, 349-354.

Jaccard A., Dubuis N., Kellenberger I., Brodard J., Schnée S., Gindro K., Schumpp O.
New viruses of Cladosporium sp. expand considerably the taxonomic structure of Gammapartitivirus genus.
Journal of General Virology, 104, (8), 2023, 1-12.

Rollin J., Bester R., Brostaux Y., Caglayan K., De Jonghe K., Eichmeier A., Foucart Y., Haegeman A., Koloniuk I., Kominek P., Maree H., Onder S., Posada Céspedes S., Roumi V., Šafářová D. et autres
Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: Large-scale performance testing of sequence analysis strategies.
PeerJ, 11, 2023, 1-25.

Moubset O., François S., Maclot F., Palanga E., Julian C., Claude L., Fernandez E., Rott P., Daugrois J.-H., Antoine-Lorquin E., Bernardo P., Blouin A., Roumagnac P.
Once upon a time, the VANA story based on the review « virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses ».
Dans: 19es Rencontres de Virologie Végétale. 15 January, Aussois. 2023, 1.

Schumpp O.
Tomato brown rugose fruit virus : Biologie, diagnostic et perspectives pour les producteurs.
Dans: Journée d’information Cultures maraîchères sous Serre. 29 juin, Ed. Agroscope, Conthey. 2023, 1-15.

Haegeman A., Foucart Y., De Jonghe K., Goedefroit T., Al Rwahnih M., Boonham N., Candresse T., Gaafar Y. Z. A., Hurtado-Gonzales O. P., Zwitter Z. K., Kutnjak D., Lamovšek J., Lefebvre M., Malapi M., Mavrič Pleško I. et autres
Looking beyond virus detection in RNA sequencing data: Lessons learned from a community-based effort to detect cellular plant pathogens and pests.
Plants, 12, (11), 2023, 1-20.

Jaccard A., Dubuis N., Kellenberger I., Brodard J., Schnée S., Gindro K., Schumpp O.
New viruses of Cladosporium sp. expand considerably the taxonomic structure of Gammapartitivirus genus.
BioRxiv, Preprint, 2023, 1-20.

Schoen R., Koning P. P. M., de Krom C., Oplaat C., Westenberg M., Massart S., Temple C., De Jonghe K., Blouin A., Botermans M.
First report of lettuce ring necrosis virus in chili pepper and tomato in Belgium and The Netherlands.
Plant Disease, in Press, 2023, 1-2.

Silva J. M. S., Melo F. L., Elena S. F., Candresse T., Sabanadzovic S., Tzanetakis I. E., Blouin A., Villamor D. E. V., Mollov D., Constable F., Cao M., Saldarelli P., Cho W. K., Nagata T.
Virus classification based on in-depth sequence analyses and development of demarcation criteria using the Betaflexiviridae as a case study.
Journal of General Virology, 103, (11), 2023, 1-16.

Maclot F., Debue V., Malmstrom C. M., Filloux D., Roumagnac P., Eck M., Tamisier L., Blouin A., Candresse T., Massart S.
Long-Term Anthropogenic Management and Associated Loss of Plant Diversity Deeply Impact Virome Richness and Composition of Poaceae Communities.
Microbiology Spectrum, 11, (2), 2023, 1-17.

Temple C., Blouin A., Tindale S., Steyer S., Marechal K., Massart S.
High throughput sequencing technologies complemented by growers’ perceptions highlight the impact of tomato virome in diversified vegetable farms and a lack of awareness of emerging virus threats.
Frontiers in Sustainable Food Systems, 7, 2023, 1-16.

Magoye E., Nägeli L., Bühlmann A., Hilber M., Keller P., Mühlethaler K., Riat A., Schrenzel J., Freimoser F.
Clinical Aureobasidium isolates are more fungicide sensitive than many agricultural isolates.
Microbiology Spectrum, 11, (2), 2023, 1-5.

Mahillon M., Schumpp O.
Jaunisses virales et syndrome des basses richesses en Suisse.
Dans: Journée phytosanitaire Grandes Cultures. 13 janvier, Bienne. 2023.

Mahillon M., Brodard J., Kellenberger I., Blouin A., Schumpp O.
A novel weevil-transmitted tymovirus found in mixed infection on hollyhock.
Virology Journal, 20, 2023, 1-10.

Robson M., Chooi K. M., Blouin A., Knight S., MacDiarmid R. M.
A National Catalogue of Viruses Associated with Indigenous Species Reveals High-Throughput Sequencing as a Driver of Indigenous Virus Discovery.
Viruses, 14, (11), 2022, 1-18.

Cabianca A., Ruthes A. C., Pawlowski K., Dahlin P.
Tomato Sterol 22-desaturase Gene CYP710A11: Its Roles in Meloidogyne incognita Infection and Plant Stigmasterol Alteration.
International Journal of Molecular Sciences, 23, (23), 2022, 1-14.

Massart S., Adams I., Al Rwahnih M., Baeyen S., Bilodeau G. J., Blouin A., Boonham N., Candresse T., Chandellier A., De Jonghe K., Fox A., Gaafar Y. Z. A., Gentit P., Haegeman A., Ho W. et autres
Guidelines for the reliable use of high throughput sequencing technologies to detect plant pathogens and pests.
Peer Community Journal, 2, 2022, 1-35.

Hofstetter V., Gindro K.
Esca disease: what we know and new research perspectives.
Dans: 49th Congress of the Wine Growers M.I.V.A. 14 October, Ed. Wine growers M.I.V.A Italia, Udine. 2022, 1-19.

Stucky T., Dahlin P.
Fluopyram: optimal application time point and planting hole treatment to control Meloidogyne incognita.
Agronomy, 12, (7), 2022, 1-11.

Trontin C., Agstner B., Altenbach D., Geraldine A., Baginska H., Brittain I., Chabirand A., Chappé A-M., Dahlin P., Dreo T., Freye C., Gianinazzi C., Harrison C., Jones G., Kaiser M. S. et autres
What did we achieve with VALITEST an EU project on validation in plant pest diagnostics?
PhytoFrontiers, In Press, 2022, 1-7.

Mahillon M., Kellenberger I., Dubuis N., Brodard J., Bünter M., Weibel J., Sandrini F., Schumpp O.
First report of Tomato brown rugose fruit virus in tomato in Switzerland.
New Disease Reports, 45, (1), 2022, 1-2.

Mahillon M., Groux R., Bussereau F., Brodard J., Debonneville C., Demal S., Kellenberger I., Peter M., Steinger T., Schumpp O.
Virus yellows and syndrome ”Basses Richesses” in western Switzerland:: A dramatic 2020 season calls for urgent control measures.
Pathogens, 11, (8), 2022, 1-18.

Lebas B., Adams I., Al Rwahnih M., Baeyen S., Bilodeau G.J., Blouin A., Boonham N., Candresse T., ..., Massart S.
Facilitating the adoption of high-throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step-by-step description.
EPPO / OEPP Bulletin, 52, (2), 2022, 394-418.

Moubset O., François S., Maclot F., Palanga E., Julian C., Claude L., Fernandez E., Rott P.C.E., Daugrois J. H., Lorquin A. A., Bernardo P., Blouin A., Temple C., Kraberger S., Fontenele R. S. et autres
Virion-associated nucleic acid-based metagenomics: A decade of advances in molecular characterization of plant viruses.
Phytopathology, 112, (11), 2022, 2253-2272.

Chooi K.M., Bell V.A., Blouin A., Cohen D., Mundy D., Henshall W., MacDiarmid R.M.
Grapevine leafroll-associated virus 3 genotype influences foliar symptom development in New Zealand vineyards.
Viruses, 14, (7), 2022, 1-19.

Temple C., Blouin A., De Jongh K., Foucart Y., Botermans M., Westenberg M., Schoen R., Gentit P., Visage M., Verdin E., Wipf-Scheibel C., Ziebell H., Gaafar Y. Z. A., Zia A., Yan X. H. et autres
Biological and genetic characterization of Physostegia chlorotic mottle virus in Europe based on host range, location, and time.
Plant Disease, online, (8 April), 2022, 1-56.

Reynard J.-S., Brodard J., Zufferey V., Rienth M., Gugerli P., Schumpp O., Blouin A.
Nuances of responses to two sources of grapevine leafroll disease on pinot noir grown in the field for 17 years.
Viruses, 14, (6), 2022, 1-17.

Fontdevila Pareta N., Lateur M., Steyer S., Blouin A., Massart S.
First report of apple rubodvirus 1, apple luteovirus 1, and apple hammerhead viroid infection of apples in Belgium.
New Disease Reports, 45, (2), 2022, 1-2.

Debonneville C., Mandelli L., Brodard J., Groux R., Roquis D., Schumpp O.
The complete genome of the “Flavescence Dorée” phytoplasma reveals characteristics of low genome plasticity.
Biology, 11, (7), 2022, 1-17.

Ruthes A. C., Dahlin P.
The impact of management strategies on the development and status of potato cyst nematode populations in Switzerland: an overview from 1958 to present.
Plant Disease, 106, 2022, 1096-1104.