Huntscha S., Stravs M.A., Bühlmann A., Ahrens C., Frey J. E., Pomati F., Hollender J., Bürge I., Balmer M., Poiger T.
Seasonal dynamics of glyphosate and AMPA in lake Greifensee: Rapid microbial degradation in the epilimnion during summer.
Environmental Science & Technology, 52, (8), 2018, 4641-4649.
Schmid M., Muri J., Melidis D., Ravikumar Varadarajan A., Somerville V., Wicki A., Moser A., Bourqui M., Wenzel C., Eugster-Meier E., Frey J. E., Irmler S., Ahrens C. H.
Comparative genomics of completely sequenced lactobacillus helveticus genomes provides insights into unique genes and resolves metagenomics data down to the strain level.
Frontiers in Microbiology, 9, 2018, 1-20.
Omasits U., Varadarajan A., Schmid M., Goetze S., Melidis D., Bourqui M., Nikolayeva O., Québatte M., Patrignani A., Dehio C., Frey J. E., Robinson M. D., Wollscheid B., Ahrens C. H.
An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics.
Genome Research, 27, (12), 2017, 2083-2095.
Schneeberger P., Pothier J.F., Bühlmann A., Duffy B., Beuret C., Utzinger J., Frey J. E.
Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection.
PLOS ONE, 12, (5), 2017, e0178195.
Remus-Emsermann M. N. P., Schmid M., Gekenidis M.-T., Pelludat C., Frey J. E., Ahrens C., Drissner D.
Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites.
Standards in Genomic Sciences, 11, (75), 2016, 1-12.
Schneeberger PH., Becker S., Pothier J., Duffy B., N'Goran E., Beuret C., Frey J. E., Utzinger J.
Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d'Ivoire: a proof-of-concept study.
Infection, Genetics and Evolution, 40, 2016, 389-397.
Rezzonico F. , Smits T.H., Born Y., Blom J. , Frey J. E., Goesmann A. , Cleenwerck I. , De Vos P. , Bonaterra A. , Duffy B. , Montesinos F.
Erwinia gerundensis sp. nov., a cosmopolitan epiphyte originally isolated from pome fruit trees.
International Journal of Systematic and Evolutionary Microbiology, 66, (3), 2016, 1583-1592.
Bühlmann A., Gassmann J., Ingenfeld A., Hunziker K., Kellerhals M., Frey J. E.
Molecular characterisation of the Swiss Fruit Genetic Resources.
Erwerbsobstbau, 57, (1), 2015, 29-34.
Bertschinger L., Baur R., Carlen C., Frey J. E., Jeangros B., Kessler W., Viret O., Mayor J.-P.
Forschungsbeiträge zur ökologischen Intensivierung für einen nachhaltigen Schweizer Nutzpflanzenanbau.
Agrarforschung Schweiz, 6, (9), 2015, 408-415.
weitere Sprachen: französisch
Reynard J.-S., Schneeberger P., Frey J. E., Schaerer S.
Biological, serological, and molecular characterization of a highly divergent strain of grapevine leafroll-associated virus 4 causing grapevine leafroll disease.
Annual Review of Phytopathology, 105, 2015, 1262-1269.
Walsh F., Pelludat C., Duffy B., Smith D. P., Owens S. M., Frey J. E., Holliger E.
Traitements des pommiers à la streptomycine et résistances aux antibiotiques dans l’environnement.
Recherche Agronomique Suisse, 5, (7-8), 2014, 300-305.
Qeli E. , Omasits U. , Goetze S. , Stekhoven D.J. , Frey J. E., Basler K. , Wollscheid B. , Brunner E. , Ahrens C.
Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data.
Journal of Proteomics, 108, 2014, 269-283.
Kiewnick S., Holterman M., van den Elsen S, van Megen H., Frey J. E., Helder J.
Comparison of two short DNA barcoding loci (COI and COII) and two longer ribosomal DNA genes (SSU & LSU rRNA for specimen identification among quarantine root-knot nematodes (Meloidogyne spp.) and their close relatives.
European Journal of Plant Pathology, 2014, 1-14.
Bühlmann A., Pothier J., Smits T., Frey J. E., Duffy B.
Summary of ACW work in Q-Detect.
In: Summary of ACW work in Q-Detect. 02.2013, Hrsg. Summary of ACW work in Q-Detect, Ljubljana. 2013, 1-1.
Kiewnick S., Wolf S., Willareth M., Frey J. E.
Identification of the tropical root-knot nematode species Meloidogyne incognita, M. javanica and M. arenaria using a multiplex PCR assay.
Nematology, 15, 2013, 891-894.
Kiewnick S., Braun-Kiewnick A., Frey J. E.
Development and validation of a real-time PCR assay for the detection and identification of the root-knot nematode Meloidogyne enterolobii, a new EPPO A2 list quarantine organism.
J. Plant Dis. Protect, 3, 2013, 142-142.
Frey J. E., Frey B., Guillén Larissa, Samietz Jörg, Rull Juan, Aluja Martín
Developing diagnostic SNP panels for the identification of true fruit flies (Diptera: Tephritidae) within the limits of COI-based species delimitation.
BMC Evolutionary Biology, 13, (106), 2013.
Mann R.A., Smits T., Bühlmann A., Blom J. , Goesmann A. , Frey J. E., Plummer K.M. , Beer S. V. , Luck J. , Duffy B., Rodoni B.
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core and provides insights into host specificity.
PLOS ONE, 8, 2013, 0.
Bühlmann A., Pothier J., Rezzonico F., Smits T., Andreou M. , Boonham N. , Frey J. E., Duffy B.
Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight.
Journal of Microbiological Methods, 92, 2013, 332-339.
Bühlmann A., Pothier J., Tomlinson J. A. , Frey J. E., Boonham N. , Smits T., Duffy B.
Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level.
Plant Pathology, 62, 2013, 475-484.
